NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209154_1069210

Scaffold Ga0209154_1069210


Overview

Basic Information
Taxon OID3300026317 Open in IMG/M
Scaffold IDGa0209154_1069210 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1537
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F016512Metagenome246Y
F018335Metagenome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0209154_10692103F018335AGGVEEDGAHVPVTAPETTVRLAGQFAARPVDGETTVVRVTAPVKPPDGVMVIVELPVAPVLKSAGEEAVIAKSAPTVKVNTTEVE
Ga0209154_10692104F016512GAGVPGEPAPAIVTENVPVVGEEQERLEVPVPLAASDTGVTVNALQVKPEGRGVSERATEPTKLNVLVRVTVDVIDVPAAPLGDVAPTVKSPT
Ga0209154_10692105F001925AGTAGVQDAATVAFAVILTGAGHVTVNPVAGLVTAARVTVPAKLNVLVKLTDIAEPVAPELKFTGEPTLMVKSPT
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