NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1000010

Scaffold Ga0209471_1000010


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1000010 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)205876
Total Scaffold Genes228 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)142 (62.28%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000443Metagenome / Metatranscriptome1132Y
F005456Metagenome / Metatranscriptome400Y
F048226Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209471_1000010132F048226N/AMSETFVGGFMSGFLSRGFLGARVGYGLYFTTARLFGVDPGAHGGSELTGAMAGYIDGQLMPTLADDENARLIAELERVKDFDLAKDQIKQIVIKRPGWYGIGFGRIKIVPLAGEPRSIQLRHPIAYDRLIQLTQVFSPELVRTQPFLAF
Ga0209471_1000010140F000443N/AMSSPSGGFAAANLSWSKVDVLTSYERLTAEIQVRGGRLRETINDPEPLFHLRNVSAEPLLTGAVPLSGVPEGLFNKNFIGGIRTIEPEPPPPDMVADMIRRYVMFQAAGFMVTGAAEFPRATETAMHTEILMKNRFFPILDATVTIFGVTGKSWTQPNIWVNRDLMLAVFLG
Ga0209471_1000010223F005456AGGVEDKPTQGGQTTPSESDVSRMVRSSVETWQPRRGPDWSDLMIRLAAAGPSPWVIYTTASAALVVILVTAYLVGSWLQIGALAPQPINTHFH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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