NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1030534

Scaffold Ga0209471_1030534


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1030534 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2634
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028468Metagenome191Y
F053938Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0209471_10305342F028468GGAGGVQRQSRVTAQNMFTDGPETTGEELDLKKLFARILEKDDWTDKLASGYEKIRGKISRPQRDTKLPKELRLLVPDMKEVEKAYVEMISGYKDFIRDVVKASRLRQEIQKDTLSTKDASRGDL
Ga0209471_10305343F053938N/AMSNVQEKESTLLNNLSSTEIANELDSRLRDLEKNIAVAREFIKLADESYSELRHKWNLLHEEVRNKPETNTTGRAIVAEEKRETRPRNKKPSKTRETEVTELNKPVSPSSTDISEKPEAHPRRIKTTNRPKKEPEISGKDADSIPSEKPSQPYRDPGRRRGRTSGRN
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