NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1041633

Scaffold Ga0209471_1041633


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1041633 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2177
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010638Metagenome / Metatranscriptome301Y
F021633Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0209471_10416331F021633AGGAMIMTRLIAFLLVLGLTATAGSGQAPANAPLKMFLNEVQPGVMSAPQHCTLVFANRRFHTEKADIKRGRDTDRRIYEGQLSDSDWNALVAVIDSPGFRNLKVPQTVPPLVMQDTHPYTISIARDKDFQNMEFLDNKSLKPYESQIKPLLQWWKALRGQRTPESSASADARCALDKTHAIFS
Ga0209471_10416332F010638AGGAGMVLSPRFGKLLAFLPVIAAFLMTNVAAGQDSTPLLRLQRSKAFLNLDTNVVHAQGLNGITYGKGGDVSSYPNSLACLTVHSDGKYVFEKRDEQTVGKPKVKTAEGTLGADDLQHLKTILDDDNLKKVVTPKPPDIPNNATIREIESVDAQIDHAGKQQRLTTIKERLKMGASEFGGATNGMDTYLDNAAPFQKTLNPLMKWFDGIEKKSKSDFKDSKPQYCAPMNIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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