NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1099036

Scaffold Ga0209471_1099036


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1099036 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1263
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F018335Metagenome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0209471_10990362F018335AGGVEEDGAHVPVTAPETTVRLVGQLAARPVDGETTVVRLTAPVKPPDGVMVIVELPVAPVLKSAGDEAVIAKSAPTLKVNTAGVE
Ga0209471_10990363F001925AGGVDDRVQEAATVAFAVMLTGAGQVTVNPVAGLVTGVRLIVPAKLNVLVRETEIAEPVAPELKLTGLPTLIVKSPT
Ga0209471_10990364F001925N/AMVTPYVPAVVEDNVQEAATVAFAVILTGAGQVTVKPVAGLVTAVRLTVPPKLNVLVKLTDITEPVAPELKLTGLPTLIVKLPTWTTELAE
Ga0209471_10990365F001925N/AVPAVVELKVHEAATVAFAVMLTGAGQVTVKPVAGLVTGLRVTVPAKLNVLVNETDIADPLAPELKFTGLPTEIVKSPTWTVETAE

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