Scaffold Ga0209647_1000064

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209647_1000064

Scaffold Ga0209647_1000064

Overview

Basic Information
Taxon OID	3300026319 Open in IMG/M
Scaffold ID	Ga0209647_1000064 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	83640
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (78.75%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F002013	Metagenome / Metatranscriptome	604	Y
F004921	Metagenome	418	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_100006431	F000626	AGGAGG	MPIVKKAPGIMTREVKLEEPVNELLEDYARLIESNADHVVNTVLKKVLWRDQDYRKWREARRTPQPGSDKGQAVEVRGRA
Ga0209647_100006469	F002013	AGGA	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSMINLQFMLEMRKLEELDESYFNEEFNVWLSDEPLTNEEICGLMRGVERERKLDGKPPLVQFLPRGKRTKKAPKKAEGVHSSRKPNGPMPSVPGVESTVPKDAHA
Ga0209647_100006470	F004921	AGGA	MPKKKKPKAVMVDGIPIKPISPAEHRRLERRIKKKYEKLRQRYPEVHGKKVDWISHWHEEGYLSFNVRFTDGKNFSILCSPTIVTNVVDFSDVKTGDSVIIREYYRRRDED

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