Basic Information | |
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Taxon OID | 3300026319 Open in IMG/M |
Scaffold ID | Ga0209647_1005598 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9153 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Laytonville, California, USA | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021300 | Metagenome / Metatranscriptome | 219 | N |
F046662 | Metagenome / Metatranscriptome | 151 | Y |
F097940 | Metagenome / Metatranscriptome | 104 | N |
F101778 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209647_10055981 | F046662 | GGA | MNAFEDAAYTMAALTATVALFRALVKKGVLTRDEAVRVLLDEAVSRAI |
Ga0209647_100559811 | F101778 | AGG | MNLLVIFIITLVIGQSLSVGLGLLVERYSTPYAGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA |
Ga0209647_10055982 | F097940 | N/A | LLVRPKGAACAFSASLSHRSPKLRWLAAISGELANLTRRAHSAAWARQYMTYDDIARSQYAASAPLPDEEHERRYCPITTIDAVRRDARG |
Ga0209647_10055988 | F021300 | N/A | MQSPKRDAFSAPLPPALIYAAALTCGVLAALALEIYLTGAGFDPANLWENSLSSGTRDLRTAGPWWGIAALAFIVSGITAAALSRFPPPWHRYRLLRWVAAGVILLLVEHITHSAGGSEGVAAGVNVAVRLMALCLAALMALLGAYVAVRR |
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