NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209647_1005598

Scaffold Ga0209647_1005598


Overview

Basic Information
Taxon OID3300026319 Open in IMG/M
Scaffold IDGa0209647_1005598 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9153
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021300Metagenome / Metatranscriptome219N
F046662Metagenome / Metatranscriptome151Y
F097940Metagenome / Metatranscriptome104N
F101778Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209647_10055981F046662GGAMNAFEDAAYTMAALTATVALFRALVKKGVLTRDEAVRVLLDEAVSRAI
Ga0209647_100559811F101778AGGMNLLVIFIITLVIGQSLSVGLGLLVERYSTPYAGMVTFIGSYFVMFWLAWRFAVRITAPRSPERGGLSSAGKSSAREAA
Ga0209647_10055982F097940N/ALLVRPKGAACAFSASLSHRSPKLRWLAAISGELANLTRRAHSAAWARQYMTYDDIARSQYAASAPLPDEEHERRYCPITTIDAVRRDARG
Ga0209647_10055988F021300N/AMQSPKRDAFSAPLPPALIYAAALTCGVLAALALEIYLTGAGFDPANLWENSLSSGTRDLRTAGPWWGIAALAFIVSGITAAALSRFPPPWHRYRLLRWVAAGVILLLVEHITHSAGGSEGVAAGVNVAVRLMALCLAALMALLGAYVAVRR
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