NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209647_1009148

Scaffold Ga0209647_1009148


Overview

Basic Information
Taxon OID3300026319 Open in IMG/M
Scaffold IDGa0209647_1009148 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6782
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002013Metagenome / Metatranscriptome604Y
F004921Metagenome418Y

Sequences

Protein IDFamilyRBSSequence
Ga0209647_10091483F004921GGAGGMPKKKKAKAVTVDGIPIKPISPAEHRRLEMRIKKKYEKLRRRYPEVHGKKVDWISYWHEEGYLSFNVRFTDGKNFSILCSPTIVTNVVDFSDVKTGDSVIIREYYRRRDGD
Ga0209647_10091484F002013AGGAMEKAHLYEALYLVNHGIDEAVRGVQRLKKSPHLFMETYHKSMAGLERRRSRINLQFMLEMRKLEEDDESRFEEEYNVWLSDEPLTNDEICQLMRTVERERKLDGKPPLVQFLSRSKRPKKTSKKTEAVQSNRKVNGSPTPASGVKSTVPEDAHA
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