NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209647_1047440

Scaffold Ga0209647_1047440


Overview

Basic Information
Taxon OID3300026319 Open in IMG/M
Scaffold IDGa0209647_1047440 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2344
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018439Metagenome / Metatranscriptome235Y
F020075Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0209647_10474402F018439AGGAGGMARYTAQIGTRSCCGKHRWPLVDIVETLATSGFEHIILEEVAFAGERVGLTLPLEIGLRGDRAQALVDVILHRLSQSLGSNALCFTGNLTVTASVEAEDIRAQEGLTLIKSKGLSCRLDPMRFPASTEVM
Ga0209647_10474403F020075N/AMERYQFEIRFRLAAELKQSYSYVEMVRCLGDSGLRDIVLERVGFLNYKDTPLALRLPSDMQSLEAESIGHELIRSLGEALGWDPRHFSGTLVLWGHGRANEEDARRAKQVLIGQGFTVFLGVPR
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