NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209472_1003887

Scaffold Ga0209472_1003887


Overview

Basic Information
Taxon OID3300026323 Open in IMG/M
Scaffold IDGa0209472_1003887 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8112
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008683Metagenome / Metatranscriptome329Y
F049546Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209472_10038871F008683GGAGMQPRVLIICERTAERDTIRVLVGTMGCQWVLASDIEEALALLGRERTSAALLELPSAISDPVKMDQGIRELLVRFPGRVIVLTDDARNPMITELASRYSIPFVQRDRLAVDLWPCLESMVYPQLGIRRITKVARLVLDTFLQPLPAGMRYMQPDTRQLVYEAPALTADISFERASNSVRTTLTGQIMRTNEPQIPLNGVPVVVKSRKGPLGLKMTNEAGEFSFEFQNEKSITLEIEVSPNDWVLIISPPLDSARRGEGQPTIDSVNADSSKLQ
Ga0209472_10038873F049546GGAGGMLRPMSFLAALLWLIIPSTPCRAQDQTQDQAQPQPSLADIARQARKDKEKNAAKSKTVITDDTLPSSKGLGGLAGDLGGSQGRVDSNAMAKALAKVEEAEAGLKQLQTLDRATLAKAVLLDNDADFPNRRAWEDKLFAAKEHYVSHEGELIAELKQIVAQVQSRQGSGKLDPNDPSSQQMKNRLLDIVQDALRTEQEYRGVVMEGWDLAKQAKH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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