NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1000036

Scaffold Ga0209470_1000036


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1000036 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79514
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001831Metagenome / Metatranscriptome628Y
F027210Metagenome / Metatranscriptome195Y
F036134Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0209470_100003621F001831GAGVGREVTAGLALFLGACAVANTPQQELAYARWAQCNSPAGRLERIDLAGRITFRYTSAGGRQEILQCLAEAGRAGPPLPEPVGVGLPGGP
Ga0209470_100003623F036134GAGGMTAPTRLWRVVVAHSPEWRETFLRLAAETEEGRSLAPAFHGNLLSFNSSAQDRGALRMVRDLMVQTNFSVEHQACGAMKTYVGDTRVSMTCACGAEIVRRLNG
Ga0209470_100003624F027210GAGGMNATRLGLVIGVIVTMAAACAGTGAAPPPSSTAYTTLMAGWEHHFQIDWTAADQGPNTRRVSGYVYNKNGEFATSLRVLAQAVDSTGTVVGQRIGYVPGGVGGFGRAYFVVPNMPVADNYRVSVWDYTWFQAPKDPR
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