NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1001200

Scaffold Ga0209470_1001200


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1001200 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19514
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021259Metagenome / Metatranscriptome219Y
F023285Metagenome210Y
F039971Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0209470_10012002F039971GGAGVRIVTWLLVVVGLVLVGVGVAAAIGQASSGAQPWGNELSDNFTFVKALPFVLGFGVAVGLLMARTYGAKVRSDGAVRRWSPGTVFGHWVLTLGFVLALPTGMWQYLGGILDVNLPIPLYLFYRVHYIGASIVLFAVAAFVSYLSMTGDRSLLVPRGEWGRHLLGLAYELPPSLRGRYAKLLRIDLRQPRPPAGKFTFYEKVVEFPSWSIVLALITITGLIKAGRYVVPVPGFVLWLASTLHVAAMVIIVIKLLDHLRYTFPRWSLMGAITTTWMKERAPAVGHGAGERGSSAAGIAGGGD
Ga0209470_10012003F021259GGTGGVRRLVALLGLVWSLANLGVAYFFLTSAFVAKTAAKEGILAQLSLLLGGVLIAGFAVLLARECLRMLTSAAASEPA
Ga0209470_10012008F023285GGCGGVTEDLSARLRRIEQQIRAFRELHQSELQMILDELADIAKEVEDAKAVERASAPSVVTPDAADPAAASPKRAKWLAEQERKSAPRSRRELLFGEREEKT
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