NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1012032

Scaffold Ga0209470_1012032


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1012032 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5082
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077138Metagenome117N
F083971Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209470_10120321F077138GAGGMSRAHIVSPTELRLRQFLKTKPRVAPPVIATLLRLDEWTRSIHAGEAESPLRRKLIARATAPDPIRQIAENLIEHASGIERDLLLKSVQEVLFYSVNFETGLNGAQIKTRLKQFLDHEKRSTFIRQFLSFYFFNYVWYHTGESFRAWALTSQVFEKEMENVEKICEKTVASAFKSREREEPVLDRNAAKELIHNVEQRLRGLDAREG
Ga0209470_10120322F083971AGGAGGMIRSQGKYFSDDELKRIIMLLRESEMSLPEIADRMNCSRSAVAAINRKFQIRLYGGRRSHWNLNRQPAFGSEEEISPAPRVAAQAVTS
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