NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1012472

Scaffold Ga0209470_1012472


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1012472 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4961
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028469Metagenome191N
F029061Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0209470_10124724F028469N/AMAETSVLTEFAGQVGAPCGCFGCFDNFDPKRASVQGEWKYKLKKHGGSLHASIFNSLVCSCLGGSVGSLCPSAEHPRTPADHICVTGIADLSPDTGNGNKASTPVAFRFEATDNGEPGTGDVYEIHILGPARGQTTTDLAKAICCTRPFVQPPGTTVFANDLGTIIRGNIQIHPALAKSTDGTCPPPSGMCVPIP
Ga0209470_10124725F029061GAGVATHDCPVGQLPPHVGGEVLAHGSSQTQPAGVATHDCPVGQLPLHVGGEVLAQGSSQTQPEGVATQDSPVGQLPLHIGGEVLAHGSSQTQPAGVATQDSPVGQVPLQVGGEVLAHGSSQTQPEGVATHDCPVGQEPPQVGGEVLAHGSSQTQPEGVATHDCPVGQEPPQVGGEVLAHGSSQTQPEGVATQDCPVGQL
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