NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1021050

Scaffold Ga0209470_1021050


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1021050 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3516
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036581Metagenome169Y
F046226Metagenome151Y
F047542Metagenome / Metatranscriptome149Y
F051821Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0209470_10210501F051821N/ATQFNPVVVEAFIKTVVGERRKSARGAQSPHEQVYQQAVEAVRVSL
Ga0209470_10210502F047542AGGGGGMKNTIKGLAFAAILALSLLASTNNAFAHDTGSGRETAWTDLGPVPTVPGGVTWEDVLDPGGVTWE
Ga0209470_10210503F046226GGCGGMITAARSPLRSLGAILFAALLALSLVASTVDVLAATPLGDRGGNDSQADNIREFFHGRGITWE
Ga0209470_10210507F036581N/AMGCLRLLFFQMWKVLLAAIVAVVLARIDSYVERRHSESVPGKAWRAYRGRSKKEPPP
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