NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1039524

Scaffold Ga0209470_1039524


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1039524 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2344
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000472Metagenome / Metatranscriptome1100Y
F006381Metagenome / Metatranscriptome374Y
F008487Metagenome / Metatranscriptome332Y
F029694Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0209470_10395241F008487AGGAGGMTVGDVGREGVRLVSGLTGVAISVPVVAGFVLLGAAVLVGRSLLDVGRKLLETKPRAREPLRAA
Ga0209470_10395242F006381GGAGGMPQRGEIVVERLTGNRLMVIDVVSPEEITCRFADGRLEDRFTFEVEPLLSPFGSLVWFFLSGFVSRWFQQGAPASVTDRLRLVRPSEPSRSPLAV
Ga0209470_10395243F000472GAGMAKTEEPLTQLATRIPKELHRRLKLHCVTNDIAVMEFVVEAIEEKLGRKRTPKKGTV
Ga0209470_10395244F029694AGCAGMPPTRVSAPDVTSITVFLASTATPERGGLPYLDAVLPAGDRLAAARVVRDLGALPPDAILYLLAQPLLDLASDHLLRDRDLTTRYEERFEVEDSDEWTAAMAEYNREADAITAALFREHGEPGLAHLYLTDRRTFDRRMERGRQHFFGPPAGAHAAYLRSKGIID
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