NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10000310

Scaffold Ga0209152_10000310


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10000310 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24015
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001940Metagenome / Metatranscriptome614Y
F012209Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0209152_1000031013F001940GGAMSAKSMKTALKGTSIEEKDAKEIISGVQAMYDKIPGFIRPMLPSLPDILKRIPASAGKYSLNEIIQLLDWAYDSGQLKK
Ga0209152_100003104F012209GGTGGMTGNQKPELSLDLGFGDQRSLATMVDALLKRGSGLSIALSDATVGVSLDKLGDWTITVGLSSRSDRFHQSMSSLERLGFFQATENEGSMYMLWTSLLSEVGDPRIVAEQTLLQALKALQASTVSLYIR
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Institute for Fundamental Biomedical Research
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