NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209266_1010623

Scaffold Ga0209266_1010623


Overview

Basic Information
Taxon OID3300026327 Open in IMG/M
Scaffold IDGa0209266_1010623 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5344
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051803Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209266_10106236F051803AGGAGMNLSSLTHATARSRKDTPISQHPFFRCAPLRLGVILLLVIFAVPATSAQEVADTIKVRTRVVFLDALVKEKKTGIPISDLNPENFEVFDDGQPRAISYFTREGQARKPLALILILDLRDDGAGRFLKREEVRKAMVEELVQLPPGDEVAILAINLNSVDDKTAVIRNGKALWLTEFTRDRTQLETALARIPALVAPSPEPNKTETAKTDEKNEKKETSMSVSASSDKIDDQTADASKSKPKENDVLETETIRGKNGAVITRTTKKDGSVDIKRVSSNGKMTVQLDNFYDLAGAVRDATHLVEDKRPNSQAAIVWLSDGIAPIFKEDRDATEQILIRQNAIFNTLTVDMRTLYKFLLPLGQPLIEWTGLSIAGSGKRLAQQSGGETVHVSRVRDYGAGLARVIGNLNARYNLGFQLSEKEKDDGRMHELVVRVKASDAKGKMQRLEVSSRRGYYLPKSDAYQAANK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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