NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209266_1016818

Scaffold Ga0209266_1016818


Overview

Basic Information
Taxon OID3300026327 Open in IMG/M
Scaffold IDGa0209266_1016818 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4112
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003152Metagenome / Metatranscriptome504Y
F009676Metagenome / Metatranscriptome314N

Sequences

Protein IDFamilyRBSSequence
Ga0209266_10168181F009676N/ADDFRFHAPIQSLNIMSAVYEGMKDGRFPSATLKEEITELGFVFGYLRKVVGKLPYYIRQQNWVHPFSTLRFSAYDVSGEDIEEFIETGIASRPLIQQLLKSVVVCVLVDCSKMTTEIDTPAYKKMLRYDSTVAKLLVSFQTYKKQEYDRLKDSGVRADSPKIYPVFVLSKFDTLRDDVLARLGLHRGFPDNNRARKEYAEALLRVFVPQTLSQIRGGKVAGVSMDKSAYFLSWVRTETHEGMDPVGQSKIVRTGFAPEGGGEPDFSYDEYVNFIEHFRDIAHKIPDEILEAERFQAQVMARSA
Ga0209266_10168182F003152AGTAGGMAPAESDRGATDGDVVEFDHWIYGVVPGVGYTTKAVSHGLDAGLYDPYLRGHYTPIRAAAAQTAEDEVDLHMIHPLRTGRELLLSRISRGIPDEAGRPTFTNHTVIARTDVLRSGQITLEAVYRSVKEFDRKAADVGPEVPLLKVPARPEAEGQWRFGNGIHKHLTFPAIESLATRIMTDPNSRTLLLCRNTTAEARKATLNLVYELLAWGCGLPLMTAISEAPRSSALNFFNFVVAPRGVRADSTWAILESALSESVLPRVLDRDEVYRVLTATVRQSADLPLAR
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