Scaffold Ga0209266_1041572

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209266_1041572

Scaffold Ga0209266_1041572

Overview

Basic Information
Taxon OID	3300026327 Open in IMG/M
Scaffold ID	Ga0209266_1041572 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2337
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003512	Metagenome / Metatranscriptome	482	Y
F009420	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209266_10415722	F003512	GGA	MPNQSAAAHHLATPFPGPQPWEAPDPLPVMRRELKLLLIEMNVLRVEVEQLRAMKREARDREEFLSASVNRLMESRDHWRREAERLCALIVQVPPWSLFWWSCVDAFKAWRKPTDRGLHH
Ga0209266_10415723	F009420	GGA	MADQNEAKTKTIGFLPIEKAQSLRGWDEYIDKSTELSVLRTEAQKAKSAVRDALKERLNENGDIDFVGEGDRVRVFRVFRKQQGRRTKSLDLSSSFREQPLEGKAETNSHYERVCEETEASTPN

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