NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1000724

Scaffold Ga0209802_1000724


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1000724 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25414
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (32.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014368Metagenome / Metatranscriptome263N
F016387Metagenome / Metatranscriptome247N
F050273Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209802_100072423F050273GAGMSYNLDPNSEYALLQLLLYIFSFVTLVLIFLYIAAERPGEGKKKAEEEEE
Ga0209802_10007244F014368N/AMTELESALKPEVRRSPDTVTRTFRIDRDVDRKMEGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDTVLKALEFLGAQYGRAFTSDHAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPAHPLNRSYEGAADLKYPTSATSRPIPKLRKGQRTESESRDA
Ga0209802_10007245F016387N/AMLELKSTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILSDEEARELGREAGANTLPEMVLFWFKKFNMENALKAMEMIGSYGNAFRLQYTLDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPMGAKVETRETDGQVVATIIRPLTGPASEHKDALLIPSFAGAKNGRGYKR
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