NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209375_1017165

Scaffold Ga0209375_1017165


Overview

Basic Information
Taxon OID3300026329 Open in IMG/M
Scaffold IDGa0209375_1017165 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4242
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036404Metagenome / Metatranscriptome170N
F044401Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0209375_10171653F044401N/AMKRIYLRALVSFAFCQFGLAAGNDSLPPPVSDKIYTFQQIEQQKLDLNGKIVRIEIGSLLGDGKSHLPNGALRYIAEDTSKGAMPFGQVAFPSEGLRNGALPDDLKKSPAAFYFRVHLFPDPNAAALCIALGRRVSVANGKAIYSW
Ga0209375_10171654F036404GAGMDRSRKIFETNHMVVDLQLSSYDNKIPPAECHYDRYPGKVERIRLPDGGTFARKQGGKWLESEDWGESGKPVKSARSNQLNVFAGYAVIPLKSKGESRDKSQGATVVRLIDQHTDKEGDEELVFEMGREHQTNVNYPTYTFLRYKNADPDDAVLYKFSGPIYSQGGTKVQLDARYGYLVAVKMDVNVVTPPPTSSPQSSVAPSISASPSAKQH
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