NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209375_1061329

Scaffold Ga0209375_1061329


Overview

Basic Information
Taxon OID3300026329 Open in IMG/M
Scaffold IDGa0209375_1061329 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1822
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019626Metagenome228Y
F042264Metagenome158Y
F048895Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209375_10613292F019626GGAGGVNRLPAYVLALSNDDLILNRLRERGHRFRRSLGVSVFGCFEFAVLANRLRTADPSEVARCLRLIESVADALGQTEDGNCVKCVAKLWLFAARIAGEAFPGRSDRYLALAKSLVPPRPVLWSFTALREEVDGYITSVGAEGGRLA
Ga0209375_10613293F048895AGAAGGLPDESSRVFEVVCKGCSRSLMTVERLRDPEIELVVDHLRACSASEPLGDTPMLGEVMARVRVAAVERA
Ga0209375_10613295F042264GGAMADYPRFTDVQVFLPRVESITLHDVPGEEHETEMVIHDELGATVSIRLISDRRIRLTDLRRR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.