NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209473_1111002

Scaffold Ga0209473_1111002


Overview

Basic Information
Taxon OID3300026330 Open in IMG/M
Scaffold IDGa0209473_1111002 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1141
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038375Metagenome166N
F091756Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209473_11110021F038375N/ALSNQAFARLGQTEDQVNALFGKPIDPGKPDSDGITTNMYKNPTGEYLAVVQFLKGHSVTESYARADSRKFSEKELSIFLQGNSAGKEWKKDPRKLAWERSDHHATALCETVAGRPTLLIRAK
Ga0209473_11110022F091756AGGMHPFRDKDLRLSITAVLLLTLVGLRPLDAKSTAKNSQQSRAFTEALAEARRLADTDAGKAYEGEFAKVVAPRLGDIVGECTKNLGPTVKFQVVFVFAANGQLERVLGPKGDAAVTCMGEKFRDLHLPAPPHGSWPVSLNINISPDNGPRLLVEAVKLMESATWEVDATISRAFKFRVRGLLAGQDFDFTVEPEDRNAFRIIAIRDQVWTSFDGSKTWKLEDAKGHALAQRFYGFVHNP
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