NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209158_1003466

Scaffold Ga0209158_1003466


Overview

Basic Information
Taxon OID3300026333 Open in IMG/M
Scaffold IDGa0209158_1003466 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9143
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004291Metagenome / Metatranscriptome445Y
F046497Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209158_10034662F046497GAGMAISRGCGIWVWLPPVVLICASTASGQGPAPETAPPLFPGGGLISYNSAFTTRSPMPGISGGVPSTARPTFSHEADFNFTWGFFRDFDLTVLIPVITTRFDITGKAVGGTGLGDSLAIVKYRFYRRDSPRGTTQASVTFGPKLPTGRTNLADANGGLLPASLQPGSGSTDLFLAGNWTYTGLFNIKRLVADEDFHALLRSQGTQATRLGSDLESRFWLSYRPYESKNVAREWFVGPVLTWLHSADDRIAGVSESESGGDVLLAGMTTYFGVRPGTHVWLGMDWAVAHSTSPLFMPVRRHISFGITQQFRLHR
Ga0209158_10034663F004291AGGAGGMNTKKMALFVLLGSMVVVPVAQAQIKHIEMRVEGMT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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