Scaffold Ga0209158

Basic Information
Taxon OID	3300026333 Open in IMG/M
Scaffold ID	Ga0209158_1027167 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026333 Open in IMG/M

Scaffold ID

Ga0209158_1027167 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2506
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2506

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003391	Metagenome / Metatranscriptome	489	N
F005235	Metagenome / Metatranscriptome	407	Y
F007411	Metagenome / Metatranscriptome	351	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209158_10271671	F005235	N/A	MTVYRRLARSKKGMSTIFGGLFFVIIILMGFNVMLWGFIQYDAYNHVITSMSQRDQQATSENLIPVNATYPTGGPLNVIVNNLGGLSVSIATVYIWNTNTTGQCRPTPCIFNPPPQLVTYFTNGNIPAGAVNFVIHVQGINVKDGNSYRITLATTRGREFSMYYPWRFSSLIVNGGGGNFVTNIGPLAVYFDTKSFNYTSGTQTTSQSAFCMPASTAVVLYIRLANTDPTYNVTLLSQTGLQAQAYGVNGFGQFAHAWILDPASINPSTNFAYNYNTNPYLLVHAGVNGPVPASFAIVKIGGSGP
Ga0209158_10271672	F007411	GAGG	MSLVKWARKTVDRNRRSRKAISTIMANLTMLIIVVSLSSLLFIWAVSSFGAYQGGAGYWFSSRSVANQERMSVEGAYFYAPGNGLNYALIYVRNVGTIPFTIVSVYINSTLYNSPATFPALQVNVSQVAPICPSTNGICGPSGGGINMHFLQPTLGPGDTQTVTIATQRGTVLTTTWVS
Ga0209158_10271674	F003391	N/A	AALLMVVIVVVAAVMVYAWSTGLLSALLVQNPVPKESMNFENFAFNVNNQNLTLNVRNTGSVAIAFASYYVKDSNGNQYARLNWPGDNAGQYPAAVNPNGLISVNIAISTKCGSSCTGATYQFSSGLSYTVTLVTTRNNQFVWQGTR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209158_1027167

Overview

Ecosystem & Geography

Associated Families

Sequences