Scaffold Ga0209057_1001565

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209057_1001565

Scaffold Ga0209057_1001565

Overview

Basic Information
Taxon OID	3300026342 Open in IMG/M
Scaffold ID	Ga0209057_1001565 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18236
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (64.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032615	Metagenome	179	N
F042237	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209057_100156514	F042237	AGGAG	VARLVWGSLLVAPALYCGVLVLLLRSGAGGPKPALADSLRTILLVLAVGQTLAVWFVWNRVVAPSGARDPANRVDPQRAITMHVVCWTLCEAIALYGLVIGLVARRLEPLFFVWGLVALLLLHPRSASFR
Ga0209057_10015655	F032615	GAGG	VTEFDKVIPPGGVGKVTASLDTSRYKGPITKSVQVTTGDPGARPVVLLLKAEIVGLIDVAPTDTPVLRTTAGEPKPTELTVSAGDGKAFDILAVKADPAVRVTVRPDPPVHAAGRAVPRAHRRPVAAGSRRYLVTITPTPRAPVGSSVANVTLSTNRPKAEAVPIRAILFVAGQVQVTPPQLVVRPGPEAPVLHVKITKPRGGKLKILGVASSDPEFRATTTAVAEGREYDLAVRYTGKPGRGPVSSRITVKTNEPQQGAIVIPLTGQI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.