NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209057_1001661

Scaffold Ga0209057_1001661


Overview

Basic Information
Taxon OID3300026342 Open in IMG/M
Scaffold IDGa0209057_1001661 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17686
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001466Metagenome / Metatranscriptome689Y
F002693Metagenome / Metatranscriptome536Y

Sequences

Protein IDFamilyRBSSequence
Ga0209057_100166118F001466N/ASSTGRTEAGPGILRARSRFRSVYWVMRPNRAALLLVATLPATGVTQAPPGPAAPTPSAPVYRGFTAGISYREFVERARSLADSDVVRCQTSPHTAQVMECGVVIHGPKDASRFYLSAHFIEGNADVVAFYDSAGFGDKRGVPLVDRTKKELTGLFGRPRPIGKSGWEWRYGRRAVRFNWRGRGTARWVSITLMDRDVMDRIARYAKTAKSRKS
Ga0209057_10016612F002693GAGGMYSKSSFKGFGHFVEWLLALGLYRLVRGAIFVLVLAGAGCLHSHKVSLARVPLVPAGERPLARRLAGADLVVTATLAKTERDWRYEEPCGILRHVLYGCSDIPKAYQGTLRRGTQTWPVFYFKVGDLPHPAVGDSAVWLLRQGVVYHLLECAQRRGVTSAYCSYDVAYVVESDDDVLPAATWEEVSELLHTLAQPPSENR
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