NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209057_1001933

Scaffold Ga0209057_1001933


Overview

Basic Information
Taxon OID3300026342 Open in IMG/M
Scaffold IDGa0209057_1001933 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16319
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011378Metagenome291Y
F038621Metagenome165N
F039541Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0209057_10019332F039541AGGAGGMIRMPVAVAAAALAGLLGFSPGARGDTSIAAIVDHPDDYANTQVTVVGTVAAPSLGYRGESFYTLFGDERRISVVSHSAAPAVGDRLEVTAKVGRRPPDDEFDFPPVLIENGRRPAP
Ga0209057_10019333F011378N/AVHDFTGGITPAGLVWTVRLPGDALTVAPRGNVVTVDARDVAVVDERAAPAGETPATVSFQMTWKGGGGRRRLAAGSPAFAGQFLRHARAHGTFSGAEDGFGFASDARRRARSAFAELGTEQNGLFLAAATECARCGAP
Ga0209057_10019334F038621AGGAGMLHPRAVRPLLLVAALVAGVIPASPARADTADASDPIPVLGGGRILSPGPRTLGFDGLAADPSTIGNFRGLVALAYLRGRVRDTTGRQWVMMNDIRLFQGDYVSADGIQRRGTFAFV
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Institute for Fundamental Biomedical Research
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