Scaffold Ga0209057_1117357

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209057_1117357

Scaffold Ga0209057_1117357

Overview

Basic Information
Taxon OID	3300026342 Open in IMG/M
Scaffold ID	Ga0209057_1117357 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1010
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039569	Metagenome / Metatranscriptome	163	Y
F095234	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209057_11173573	F039569	GGA	VRAGLITATFAYTAWMVIVAFMAGSGWALAQVFTQADPGMTATRAVFVYDMIHPFALATQRVAGFALGLSTCLFGWGVVDGKALPHWVGTSGMGAGAVAMAFALGFPENTKADQAAFVLPVLWQMVTGAVLLARANAHDAPRPTVGGVRAA
Ga0209057_11173574	F095234	N/A	SDDPGGPDIVVAVNGTATRNRSAFRDALKNVKQGDVVTLQVLSRSPDTADGWAGRVVRIRAR

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