NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209159_1055959

Scaffold Ga0209159_1055959


Overview

Basic Information
Taxon OID3300026343 Open in IMG/M
Scaffold IDGa0209159_1055959 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1904
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002331Metagenome / Metatranscriptome569Y
F005023Metagenome / Metatranscriptome414Y

Sequences

Protein IDFamilyRBSSequence
Ga0209159_10559591F005023AGGGGGMKRTALTLGLALLATPATAQWLGEAGGGNAFGGRITLGAGTFTLTGGVSSWKKDLVSERVTTFGGTAAFRLVGGSLIPVALNLQLGGGHSLEITSSTTTVPVQTTLLAAIGLSVPLPTPVVRVEPYVSPGIRYHHFANAAPNQTNFGWVIGGNVGFGPIGIHLAYDSEKFDDGTRRGVFGVGANIE
Ga0209159_10559592F002331AGGMRAVLTLGLAACLATPATAQWLGMPVWNSPKGGTGVTISGDYGKPNDAYGGGNAWGGHASLGVGTLTLTAGVSSLKTDIDPVRVTSWGGNAAFRLIGGSLLPFSLNLQAGAVRTSAVEGQKQTHVIGAVGFSVPLPTPGISIEPYFSPGIRHRDLGPTNGSSTEFGYVFGANLSFGLLGAHVAYDNERKKGGGNVGVFGVGLHVDLHLPLGM
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