NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209159_1134424

Scaffold Ga0209159_1134424


Overview

Basic Information
Taxon OID3300026343 Open in IMG/M
Scaffold IDGa0209159_1134424 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1011
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045033Metagenome / Metatranscriptome153N
F104878Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209159_11344241F104878GGAGGMRHGRCLAAFLGVLLWGAAGQADITNTTPYDYDSPPRPGKEQGTYMAAATGSLGPDCFFTFIGTAKYLPNPDGSGGKHCT
Ga0209159_11344242F045033N/AVGDWSAPVIWRVRPGGGQAEPWFADPRLAGTYGANVAGIALDPSGEDLYIAAGTQEGQIAIYRLPLAHPDAAHLEEFHRYTDFVMTPCSADPDLALIGCALMPAIGGGGIAFGASGRLYVALFAKNQLSILDSDGTEALRFPSPEEDAERDIPVNGPFGLAFDGRGSLLVANTGDPTFGKGPGGIDPPGGLVTSDTWVVFDVFVNDTAAPLFRPVIP
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