NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257170_1012283

Scaffold Ga0257170_1012283


Overview

Basic Information
Taxon OID3300026351 Open in IMG/M
Scaffold IDGa0257170_1012283 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026653Metagenome / Metatranscriptome197Y
F086059Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0257170_10122831F086059N/AIQPKPASAAPPQPSPSEVLLAGKPVRLESAKPTKKPVEVVIRDLYERDGRVLVRYAVRNRGAHAYDVSTPQVYALTGARYPQSLYSLVDSQLGDREAARLTIKQETPVPVLEGHLQSSHLAPGQESIGVVAVRLPTSTEPTVLRFQFADDDRERIAAFLVR
Ga0257170_10122833F026653AGGAVLRKLEALTFFSAMMLAVILEGAVVYWLSGHSLVHATPDGSLNVVGEWTGFALPQGWLFGALLVLVYRVAAMLIPPRSWTDSEGMHNRRAFVRLWCLAMALVAMQGLLFLL
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