NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257149_1015053

Scaffold Ga0257149_1015053


Overview

Basic Information
Taxon OID3300026355 Open in IMG/M
Scaffold IDGa0257149_1015053 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1029
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026653Metagenome / Metatranscriptome197Y
F072557Metagenome121Y
F086059Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0257149_10150531F026653AGGAVLRKLEALTFFSAMMLAVILEGAVVYWMFGHSVVHAAHDGSLNAVGEWTGFALPQGWLFGALLVLVYRVTAMLIPPRSWTDSEGMHNRRAFVRLWCLAMALVAMQGLLFLLGNVSASS
Ga0257149_10150532F072557AGGAGGMLRDALRKRPDLGLRRTVAHHLLEPISPFDPNSVRRPQRWFVLACIVSLVALGAVVYFNFWN
Ga0257149_10150533F086059N/AVEVVIRDLYERDGRVLVRYAVRNRGAHAYDVSTPQVYALTGARYPQSLYSLVDSQLGDREAARLTIKQETPVPVLEGHLQSSHLAPGQESIGVVAVRLPTSTEPTVLRFQFADDDQERIAAFLVR

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