NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257167_1022716

Scaffold Ga0257167_1022716


Overview

Basic Information
Taxon OID3300026376 Open in IMG/M
Scaffold IDGa0257167_1022716 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000321Metagenome / Metatranscriptome1304Y
F013723Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0257167_10227161F013723AGGAVGAGKTTFYEAFLKEPFPTLVPPLRHQQQPFLDDRRSFAVEDIRVDTQLLDQARAAGFST
Ga0257167_10227162F000321GGAMGELSTSINDALLAVDLNTVELVTLQSRQKQTGRETQVVILNRLRKRIHGIAKKRNCSMNRLVNSALLAYYTKTGEGKLKKRPKGRGASLRSYDTMSESERRELHQLLGGLSAMQSVPLEAEEPNGTYYEYDRNLKATVKVTSDGERTPVEKLETRFEPTRRKGPRKIAHEEIAS

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