NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257167_1047744

Scaffold Ga0257167_1047744


Overview

Basic Information
Taxon OID3300026376 Open in IMG/M
Scaffold IDGa0257167_1047744 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)655
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001983Metagenome / Metatranscriptome608Y
F059477Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0257167_10477441F001983AGGAMTRKNTWARLAVAVVLSLPMTACKDTKTLQENEQLKAHVAELQKENGQLGNNLETMTAARDELTKENEALKTEIKA
Ga0257167_10477442F059477GGAGMAGAKDKSKLGYRILLGAVVLVLGGSMLLYLVPQSPVSGEISTDTVAKIGDESVSVQDVRQQLNQIEQRNPNMKA

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