NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257171_1002072

Scaffold Ga0257171_1002072


Overview

Basic Information
Taxon OID3300026377 Open in IMG/M
Scaffold IDGa0257171_1002072 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2869
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003165Metagenome / Metatranscriptome504Y
F030585Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0257171_10020722F030585AGGMFLILGASVMAGAQTQAAERASLPQRGNEKYWLVVDEFADRAVHFAYAKRFVQVHEGSLTDRQCQQYSRIAADYADQLAALRQAGVSAQTEFWNDVRAYSISMIGAPGVPIPGRGTGKYWVTTGSEAEDHELRRIVPLEIDEASSQLIRTGGYSPSALKPDCRTAPQELTAKAER
Ga0257171_10020724F003165AGGAGMAKVIEFYVPKNFRMARASQSQHGKVIEFCSRTKKSA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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