NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247606_1009637

Scaffold Ga0247606_1009637


Overview

Basic Information
Taxon OID3300026398 Open in IMG/M
Scaffold IDGa0247606_1009637 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 58R_r (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)937
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Rhodophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049390Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0247606_10096371F049390N/AIVPISCNPEEVCASENMIRLVPASLMKALLYVAAYTIWYVCRAMHFLLKLADRLFARTSSSSKYAGKTVLVTTGRQAKTLHGVRALKQVGCRVVVTDYQEISASAVSTACDATAVLAPLDPRKVSQWVDHLEKIIREEKVDLVLPMSTINEALFMGAAKDWLSESLPHVSFACEGLEMMARLDNKALFAEMCKESGVPIPEDGVITNRNQLDDDSLPFKDMDVIIKRIESTVNRDEEIKIVPRGGKAPEAVQPTASDPWQWQRFIRGTEYSAWFVCVDGQITFQGCYRSEGDLLFFDGIPVPEDVAASLGR
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