NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247593_1082110

Scaffold Ga0247593_1082110


Overview

Basic Information
Taxon OID3300026449 Open in IMG/M
Scaffold IDGa0247593_1082110 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 56R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)632
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001478Metagenome / Metatranscriptome687Y
F031121Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0247593_10821101F001478GGTGGMFRLKDQFYITNEKGKVIAVDGGIDNENRNIVMEQRNNKVHQRWRVVYVEDYEDEPTKGQLNKKFGLYVERDFYVVSAIGNKYLDILNNRYLAIKTHVNSRKTQVFYF
Ga0247593_10821102F031121N/AVVYVDTVKLETKGLNEEFGFHINRPFYIVSELPMNKVAEMLGGTNMVLKRWRKNTRQQQFFFDEKTKTIRNNYWKNYCLDIQSNGNSNNLRTVSSINSRWW
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