NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247845_1003479

Scaffold Ga0247845_1003479


Overview

Basic Information
Taxon OID3300026451 Open in IMG/M
Scaffold IDGa0247845_1003479 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2649
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002283Metagenome574Y
F036047Metagenome170Y
F083513Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0247845_10034791F002283N/AIQVLPPNQSLKLTEPAVDDFARAKQPATVGRDLPHADWIPSLRHFVAAA
Ga0247845_10034793F083513GGAMFITKIKNETFLTRSFVQLNQLTLPPNQSLKLTEPAVDDLARAKQPSTIGLDIPRADWLPSPRRFAAAA
Ga0247845_10034794F036047GGAMSINSINNDNILNTKRNPSSPSPLPPNQSLKLTEPAVDDFARAKQPATVGRDLPRADWIPSLRHFVAAA
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