NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255351_1006305

Scaffold Ga0255351_1006305


Overview

Basic Information
Taxon OID3300026456 Open in IMG/M
Scaffold IDGa0255351_1006305 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3672
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057821Metagenome135N
F098449Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0255351_10063052F098449GAGGMNRNFNINGLHPARADACLEPARAQAFVHLVDGGGRIESVTEEQSMQNGAAVATVGRTSKGGRPRKCYDYLIGTIHHFLVIDRIFRRAQNEPYAATTCTRCGTHTECRLRDILSGHTKSCKCLRPEQYLTNVGSQADQLPEQKVAQIWSMHFSGAGRWAIAIEHKLAVIVVDFALRRYQRILDGIINTGRALLMATRAVTPQVRDYLRKAEYRFQNVLRRASERAVESDKTCRAWERMMRRYIQDHAQEWHTPIGPDDEVEFLNE
Ga0255351_10063056F057821AGGAGMSIDMNLLSVNADALSTNQNSELPGWNVPSHMAFHIVFDGRLDINGKLDPVIRRPYRDTSRPYNQRRDFMAHETRQVLDDRMPAGVEYGIVTFDGGSKAAREETRRLVEHLSRGWTDNGKRFRCVYGHAADTGFMLFVDAKSSIHGPDDLGIHISSDPKAAK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.