NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247604_1016369

Scaffold Ga0247604_1016369


Overview

Basic Information
Taxon OID3300026460 Open in IMG/M
Scaffold IDGa0247604_1016369 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 85R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1709
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049671Metagenome / Metatranscriptome146N
F062783Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0247604_10163692F062783GGAGMGAVKSMMMDVEEFVYDFYTADGEALESPKVIIEKAIEEFGWSFGSYASEVIENAEEENGASWDWNKSVSQNLVGYEIDDSIPY
Ga0247604_10163693F049671AGGAGMVKVVIGTIGILGLASCNYAVADSPCDYVKDVQTNWTQQIEKTSNIDKKVFPYVEDTRKCMMTMDVTINGQTYPAEGSYVFGPDMSENDACDNATVNAKKSVISEVSPEILSATTEMNCSIQESPVVAEAPTETVTIQEGTPVETETVISRKIVDRSTNNVVQYIPDRKTINIGGFTIGFNGYKEPGKCYANWQTGGTDCY
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