NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247588_1014918

Scaffold Ga0247588_1014918


Overview

Basic Information
Taxon OID3300026465 Open in IMG/M
Scaffold IDGa0247588_1014918 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 48R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1435
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026009Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0247588_10149181F026009GGAGGMASLGGLDVAFGSSLQLVRTNVLIIETDSTTTKTMAENVHSVASRKYPAAVRPDFTCFVADGDVDATGYASALTDIVEGNILKDINAVPMAGSQYDATDANNRGMVWEGILNVGMAQINANDTMTADDLFTDASPAGIETDEMQGFPHLLQAQLMAAQFASDLTTLAGNHGVRTLDLEPLLDDSGILGATKVTDGLDAITESSTAAELNDGIAGAGALVSILAIGRIA
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Institute for Fundamental Biomedical Research
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