NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247598_1001232

Scaffold Ga0247598_1001232


Overview

Basic Information
Taxon OID3300026466 Open in IMG/M
Scaffold IDGa0247598_1001232 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 70R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4409
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001478Metagenome / Metatranscriptome687Y
F031121Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0247598_10012322F031121GAGMLGGTNMVIKRWRKNARNQQFWFDEVTKTVRNNYWKNYCLDISGNGGSSNLRTVSSITSRWW
Ga0247598_10012323F001478GAGMFRVKDGSFITNEKGKVIEVSGGVDNENQNLVVNNRNGKVHQRWKVVYVDEYEKEPTKGQLNKKFGLYVERDFYVVSALPDHRYLDLINNRNMVIKVKNGRKSQVWYFHQQSLTIRTRYNNQSWDIKSAGRTNNM
Ga0247598_10012325F001478GGTGGMWRYEGVYVTNEKGKVLDTSGNLDQENRNIEVRPKNTNLAAFSQQWDIVYADEWKGEPGKGEFNEKFGLFVERDFHIVSQLPDNRYIDLINNRNFVIKTSNGRKSQVWYFHQQSLTIRTRYNNQSFDIKSSGKTNDM
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