NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257154_1000176

Scaffold Ga0257154_1000176


Overview

Basic Information
Taxon OID3300026467 Open in IMG/M
Scaffold IDGa0257154_1000176 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5356
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004702Metagenome / Metatranscriptome427Y
F019512Metagenome / Metatranscriptome229Y
F045234Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0257154_10001762F045234GGAGGMCPACIASAALIITGIMSTGGLTALAAKKLHAKNVANDRGSFDSESRKDVQSKSDTHGKEQP
Ga0257154_10001765F019512AGGAMRMYRATSLAALALIMLLGPSGCGHSSSDSSANEEIPGLTSADRDAQRAAMAELQRHWLKGSDGWTTAIVSGSPYAPDHFLRQCRTLTIKEMEPQDLSESDKLNGFEWVGRANFQPTSCREAGGQTSMVLDGMSNVVVSKHSGQWSQWVDFTPGPLRFAREKGRWQFNWDATYLRGTLPGPQDFANAGVH
Ga0257154_10001766F004702AGGAGMNGTAIRTALLVLVLAGATLAIGCGGGAEGKYRDPSGTINAEFKDGKAYVALGAYAVDGTYKIEGDKIVARGDFGPMLPSPLVFTINKDGTIDGPRNSMIPRLEKAK
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