NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247602_1075449

Scaffold Ga0247602_1075449


Overview

Basic Information
Taxon OID3300026471 Open in IMG/M
Scaffold IDGa0247602_1075449 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 77R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)905
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001478Metagenome / Metatranscriptome687Y
F031121Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0247602_10754491F001478AGGTGGMFRVKDQFYITNEKGKVVSVDGGKDGENKNLVMESRNGQVYQRWRVVYVDEYEKEPTKGQLNKKFGLYVERDFYVVSALGTKRYLDLINNRNMVIKTPNGRKTQVWYFHQQSMTIRTRYNNQSWDIKNAGKTNDMQIW
Ga0247602_10754492F031121N/ALNEEFGFYINRPFYLVSELPMNRVAEMLGGTNMVLKRWRNNTRQQQFWFDEVSKTIRNNYWKNYCLDIQGNGSSKNLRTVSGINSRWW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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