NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257172_1021295

Scaffold Ga0257172_1021295


Overview

Basic Information
Taxon OID3300026482 Open in IMG/M
Scaffold IDGa0257172_1021295 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1141
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000437Metagenome / Metatranscriptome1146Y
F047273Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0257172_10212952F000437GAGGLKIRSVFAVLAVLSSAICASPPQARSQSAEKKLVWKSVAFAIVKFNDQAPKSWNIYHTEKKGLLLVHLWKRYLLVDMKEQEAYEIDPQTVKLHGEGVEWSTADKPDQPIETPDWKTRDVGSVQMVRFRLGKDGHVLELQIPLLINGKPAY
Ga0257172_10212953F047273N/ALAIAVVLDRRARNRRELEVLKRVYSGFIPLPWILAVTLLLNGKLDSQKNVAYHATTVDSRYNMPGIVRGTRRLFVHSWREGQKIERLAVDFDDYDRFRAGDSVIVGVEPGALGIPWYYGVYRR
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