NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256820_1002910

Scaffold Ga0256820_1002910


Overview

Basic Information
Taxon OID3300026486 Open in IMG/M
Scaffold IDGa0256820_1002910 Open in IMG/M
Source Dataset NameSediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PR6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2055
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.3377Long. (o)-81.4644Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074466Metagenome119Y
F102135Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0256820_10029102F102135N/ALPIIDTISLKRPSSATERYMCWTGLIVGIFLGAGIGIVVAGILSAPKRREAEDHSSETPIYYPLMDEVEEVPDELPPLPKPETYFDRYPHS
Ga0256820_10029103F074466AGGAMISISEEPQFSAEDIYEIPVGVGRTSFEFDTNLIKACHPLFQMHRSNDILANDLIRAHVIRISDMNLSAQDAIIVRFKSKMASMNFIKRLNIYLHKCYIKQRDWERSATVIEGK
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