NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228641_1076182

Scaffold Ga0228641_1076182


Overview

Basic Information
Taxon OID3300026491 Open in IMG/M
Scaffold IDGa0228641_1076182 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 52D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)761
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001746Metagenome / Metatranscriptome643Y
F031303Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0228641_10761821F001746N/ALVKIKNDYKDLPDVNHLASFIMANRRNVKFRMQDRKTIFYSNMDKSQELIERFWEFWIGSETVDPKFKNLGKDTVGCTRLPHGKYQYQVYLKKDAQVLMTKTQKTNLWEFLERNVDNCLVSNYNIIDFLEDKSPYCFGGYFYVKEEKYLTPIYMLAQQAIDKVIKFRKVKYGSDKKTTR
Ga0228641_10761822F031303AGGMEAIKKLRDKKIFNDQSIVESMIQKNWMGSPVIKRSLLRVRKVNEDHCVCEELGEADGKAYKIKYINVLTVDGQEPNELAAVY
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