NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257157_1000957

Scaffold Ga0257157_1000957


Overview

Basic Information
Taxon OID3300026496 Open in IMG/M
Scaffold IDGa0257157_1000957 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3698
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008278Metagenome / Metatranscriptome336Y
F025841Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0257157_10009572F025841GAGMIRGRAARSIVPAFTLSLLVWLVAGCATARPTNLVQTPSGYEVLSAQCPPTAESCSAIRVTGDPHDEEAWGFRARPGADSIWKESQILYAVGNRMRCDEVRATLQTPSEACWGPVYFRREGR
Ga0257157_10009577F008278GGAGGVNVPLIVAGSLAILGAAIHGAGGEVLVMRQLSPGMLPSSRFGGPRTTKLMIHTTWHLTTIAFLTIGLALLLSGSVLHGDTARGIGLVGAGASTGFAALAVGLGAAYTRSARFLFRHPGPAVLTATAALAWWGVL
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